GBMConnectivity

Welcome to the interactive webtool for the connectivity in glioblastoma!

It enables users to visualize and further explore the scRNA-seq datasets from paper:

A clinically applicable connectivity signature for glioblastoma includes the tumor network driver CHI3L1

There are two datasets available:

PDGCL: 35K cells from three patient derived glioma cell line (PDGCL) mouse models. The cells from each PDGCL mouse was FACS sorted by SR101 to seperate TM-connected and TM-unconnected cells.

Patient: 213K cells from 21 glioblastoma patient samples, including 172K maligant cells and 41K nonmalignant cells.

Please go to next tab for further exploring data!

The data is available in EGA database under the accession number EGAS00001007611.

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Zero expression cells:

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Correlate with connectivity score derived in:

Single Cell

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Select gene

Zero expression cells:

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Correlate with connectivity score derived in:

Single Cell

Bulk

Select gene

Zero expression cells:

Keep

Remove

UMAP
InCellType